PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G130700.1.p
Common NamePRUPE_ppa005343mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 493aa    MW: 55169.8 Da    PI: 7.5168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G130700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12303348454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  Prupe.5G130700.1.p 303 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINKL 348
                         799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.4E-4220208IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.62E-18296365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-14297353No hitNo description
PROSITE profilePS5088817.003299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17303362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MEEIMSSCSP NFGQENSATL QQRLQFIVQN RPEWWVYSIF WQASKDSNGQ VALSWAGGHF  60
RSSRDLASKR SNKLVHNYQP KSGFISTERK KVVNREVEAL FNEDMDLDGG DVTDSEWFYF  120
YTVSLTQSFG ACHGTGNILG RAFCSGGFVW LAGDHELQFY ECERVKEARM HGIQTLVCIQ  180
TSCGVLELAS LDVIKEDWGL VELSKSLFGS ENSRVSKPQS SREGHVLVPL LESGMFSAGP  240
QKEWTAQGGT KERFALNIGG SSSDSGPSDS VGNFTTENAE NNGRLKKRGR SSNHGTDRES  300
PINHVEAERQ RREKLNHRFY ALRSVVPNVS KMDKASLLSD AVVYINKLKA KVEELEAKIQ  360
QPPQKPKLGI LSNLEHQSNQ SASSIVDHHR HHHHHQARPR PASSYTNSEV AGAIEVDVKI  420
VGSEAMIRVQ SPDQNYPYAR LMNALKDLEL QVYHASISSV KEMMLQDVVA RVPHGFTSEE  480
AMRTAIIKRW YN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-24142083192Transcription factor MYC3
4rqw_B1e-24142083192Transcription factor MYC3
4rs9_A1e-24142083192Transcription factor MYC3
4yz6_A1e-24142083192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284290LKKRGRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008245834.10.0PREDICTED: transcription factor bHLH14-like isoform X1
TrEMBLM5W9B50.0M5W9B5_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s11400.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-58bHLH family protein